STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdhAFragment of putative 3-dehydroquinate synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (428 aa)    
Predicted Functional Partners:
lpd
Lipoamide dehydrogenase, E3 component; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
  
 
 0.955
icd
Isocitrate dehydrogenase; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
   
 0.903
nadE
Glutamine-dependent NAD(+) synthetase (NAD(+) synthase (glutamine-hydrolyzing)) (NadE); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.885
argD
Bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
  
 0.864
CCD28878.1
NADP-dependent malic enzyme (Nadp-me); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
  
  
 0.854
purL
Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
    
  0.844
aspC
Aspartate aminotransferase (Transaminase A) (AspAT); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
   
 0.824
ctaC
Cytochrome c oxidase, subunit II (Cytochrome aa3 subunit 2); Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.823
CCD30218.1
Putative Histidine kinase, sensor protein (fragment); Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme.
  
 0.819
CCD29971.1
D-amino-acid transaminase; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme.
  
 
 0.775
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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