STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SsaSSecretion system apparatus protein ssaS; Evidence 2b:Function of strongly homologous gene; Product type t:transporter. (89 aa)    
Predicted Functional Partners:
EscR
Type III secretion system EscR protein; Evidence 2b:Function of strongly homologous gene; Product type t:transporter.
 
 
 0.995
ssaJ
Type III secretion system lipoprotein; Evidence 2b:Function of strongly homologous gene; Product type lp:lipoprotein.
 
 
 0.988
escT
Type III escT secretion system protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type m:membrane component.
 
 
 0.983
EscV
Type III secretion system EscV protein; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type t:transporter.
 
 
 0.982
escC
Type III secretion system EscC protein; Evidence 2b:Function of strongly homologous gene; Product type m:membrane component.
 
 
 0.941
PscQ
Type III secretion system apparatus protein PscQ; Evidence 2b:Function of strongly homologous gene; Product type f:factor.
  
  
 0.916
fliI
Type III secretion system ATPase (flagellum-specific ATP synthase); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
 
  
 0.910
gspD
General secretion pathway protein D; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type t:transporter.
  
 
 0.794
CCD29225.1
Hypothetical protein; Evidence 5:No homology to any previously reported sequences.
       0.773
CCD29226.1
Putative hydrolase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme.
       0.773
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.