STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SsaKType III Secretion system apparatus protein ssaK; Evidence 2b:Function of strongly homologous gene; Product type f:factor. (217 aa)    
Predicted Functional Partners:
fliI
Type III secretion system ATPase (flagellum-specific ATP synthase); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
  
 
 0.996
PscQ
Type III secretion system apparatus protein PscQ; Evidence 2b:Function of strongly homologous gene; Product type f:factor.
  
 
 0.994
CCD29585.1
Two-component response regulator, ntrX-like; Evidence 2b:Function of strongly homologous gene; Product type r:regulator.
  
 
 0.806
CCD30067.1
Sensor protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme.
  
  
 0.781
ssaJ
Type III secretion system lipoprotein; Evidence 2b:Function of strongly homologous gene; Product type lp:lipoprotein.
  
  
 0.769
CCD29305.1
Putative flagellar biosynthesis protein, FliO; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type ps:putative structure.
  
  
 0.704
rplN
50S ribosomal subunit protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.641
CCD29956.1
Putative 60 kDa chaperonin (fragment); Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf:putative factor.
    
   0.641
CCD30218.1
Putative Histidine kinase, sensor protein (fragment); Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme.
  
  
 0.631
EscV
Type III secretion system EscV protein; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type t:transporter.
  
  
 0.597
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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