Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CCD28819.1 | CCD28820.1 | CAGGBEG34_180129 | CAGGBEG34_180130 | Putative Non-ribosomal peptide synthase,PvdD/PvdJ-like; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. | Putative non-ribosomal peptide synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | 0.999 |
| CCD28819.1 | UbiA | CAGGBEG34_180129 | CAGGBEG34_260025 | Putative Non-ribosomal peptide synthase,PvdD/PvdJ-like; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. | Prenyltransferase, UbiA family; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme; Belongs to the UbiA prenyltransferase family. | 0.861 |
| CCD28819.1 | ddlB | CAGGBEG34_180129 | CAGGBEG34_220014 | Putative Non-ribosomal peptide synthase,PvdD/PvdJ-like; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. | D-alanine--D-alanine ligase B (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B), ddlB; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.927 |
| CCD28819.1 | mnmC | CAGGBEG34_180129 | CAGGBEG34_190032 | Putative Non-ribosomal peptide synthase,PvdD/PvdJ-like; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. | 0.590 |
| CCD28819.1 | ubiA | CAGGBEG34_180129 | CAGGBEG34_280030 | Putative Non-ribosomal peptide synthase,PvdD/PvdJ-like; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. | 4-hydroxybenzoate octaprenyltransferase (4-HB polyprenyltransferase); Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.588 |
| CCD28819.1 | ubiE | CAGGBEG34_180129 | CAGGBEG34_220020 | Putative Non-ribosomal peptide synthase,PvdD/PvdJ-like; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. | Ubiquinone/menaquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.940 |
| CCD28819.1 | ubiG | CAGGBEG34_180129 | CAGGBEG34_200117 | Putative Non-ribosomal peptide synthase,PvdD/PvdJ-like; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. | Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.721 |
| CCD28819.1 | ubiH | CAGGBEG34_180129 | CAGGBEG34_250027 | Putative Non-ribosomal peptide synthase,PvdD/PvdJ-like; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. | 2-octaprenyl-6-methoxyphenol hydroxylase,FAD/NAD(P)-binding; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme. | 0.641 |
| CCD28819.1 | ubiH-2 | CAGGBEG34_180129 | CAGGBEG34_280023 | Putative Non-ribosomal peptide synthase,PvdD/PvdJ-like; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. | Ubiquinone biosynthesis hydroxylase,UbiH/UbiF/VisC/COQ6 family; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme. | 0.641 |
| CCD28820.1 | CCD28819.1 | CAGGBEG34_180130 | CAGGBEG34_180129 | Putative non-ribosomal peptide synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | Putative Non-ribosomal peptide synthase,PvdD/PvdJ-like; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. | 0.999 |
| CCD28820.1 | UbiA | CAGGBEG34_180130 | CAGGBEG34_260025 | Putative non-ribosomal peptide synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | Prenyltransferase, UbiA family; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme; Belongs to the UbiA prenyltransferase family. | 0.861 |
| CCD28820.1 | ddlB | CAGGBEG34_180130 | CAGGBEG34_220014 | Putative non-ribosomal peptide synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | D-alanine--D-alanine ligase B (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B), ddlB; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.927 |
| CCD28820.1 | mnmC | CAGGBEG34_180130 | CAGGBEG34_190032 | Putative non-ribosomal peptide synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. | 0.699 |
| CCD28820.1 | ubiA | CAGGBEG34_180130 | CAGGBEG34_280030 | Putative non-ribosomal peptide synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | 4-hydroxybenzoate octaprenyltransferase (4-HB polyprenyltransferase); Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.619 |
| CCD28820.1 | ubiE | CAGGBEG34_180130 | CAGGBEG34_220020 | Putative non-ribosomal peptide synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | Ubiquinone/menaquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.942 |
| CCD28820.1 | ubiG | CAGGBEG34_180130 | CAGGBEG34_200117 | Putative non-ribosomal peptide synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.825 |
| CCD28820.1 | ubiH | CAGGBEG34_180130 | CAGGBEG34_250027 | Putative non-ribosomal peptide synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | 2-octaprenyl-6-methoxyphenol hydroxylase,FAD/NAD(P)-binding; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme. | 0.892 |
| CCD28820.1 | ubiH-2 | CAGGBEG34_180130 | CAGGBEG34_280023 | Putative non-ribosomal peptide synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | Ubiquinone biosynthesis hydroxylase,UbiH/UbiF/VisC/COQ6 family; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme. | 0.892 |
| UbiA | CCD28819.1 | CAGGBEG34_260025 | CAGGBEG34_180129 | Prenyltransferase, UbiA family; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme; Belongs to the UbiA prenyltransferase family. | Putative Non-ribosomal peptide synthase,PvdD/PvdJ-like; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. | 0.861 |
| UbiA | CCD28820.1 | CAGGBEG34_260025 | CAGGBEG34_180130 | Prenyltransferase, UbiA family; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme; Belongs to the UbiA prenyltransferase family. | Putative non-ribosomal peptide synthase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | 0.861 |
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