STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCD29486.1Putative outer membrane metallopeptidase lipoprotein nlpD; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. (286 aa)    
Predicted Functional Partners:
pcm-2
Protein-L-isoaspartate O-methyltransferase; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
     
 0.821
CCD28861.1
Membrane-bound lytic transglycosylase,catalytic precursor; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme.
  
 
 0.804
surE
5'-nucleotidase SurE (Nucleoside 5'-monophosphate phosphohydrolase); Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
  
  
 0.788
CCD29489.1
Putative cytochrome c; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pc:putative carrier.
       0.757
CCD29490.1
Evidence 2b:Function of strongly homologous gene; Product type c:carrier.
       0.757
CCD29491.1
Putative G:T/U mismatch-specific uracil/thymine DNA-glycosylase; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e:enzyme.
       0.618
msrA
Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase); Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.612
CCD30067.1
Sensor protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme.
   
  
 0.603
ftsJ
Ribosomal RNA large subunit methyltransferase E; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
  
    0.597
ctaC
Cytochrome c oxidase, subunit II (Cytochrome aa3 subunit 2); Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.581
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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