Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CCD29721.1 | CCD29722.1 | CAGGBEG34_290014 | CAGGBEG34_290015 | Putative 16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Exported hypothetical protein; Evidence 5:No homology to any previously reported sequences. | 0.553 |
| CCD29721.1 | CCD30067.1 | CAGGBEG34_290014 | CAGGBEG34_30029 | Putative 16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Sensor protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme. | 0.620 |
| CCD29721.1 | CCD30075.1 | CAGGBEG34_290014 | CAGGBEG34_30039 | Putative 16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Putative DnaJ domain protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | 0.436 |
| CCD29721.1 | dnaJ | CAGGBEG34_290014 | CAGGBEG34_250018 | Putative 16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.463 |
| CCD29721.1 | ksgA | CAGGBEG34_290014 | CAGGBEG34_260042 | Putative 16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Hydroxyacylglutathione hydrolase (Glyoxalase II) (Glx II) GloB-like (part 2); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.413 |
| CCD29722.1 | CCD29721.1 | CAGGBEG34_290015 | CAGGBEG34_290014 | Exported hypothetical protein; Evidence 5:No homology to any previously reported sequences. | Putative 16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.553 |
| CCD30067.1 | CCD29721.1 | CAGGBEG34_30029 | CAGGBEG34_290014 | Sensor protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme. | Putative 16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.620 |
| CCD30067.1 | CCD30075.1 | CAGGBEG34_30029 | CAGGBEG34_30039 | Sensor protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme. | Putative DnaJ domain protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | 0.699 |
| CCD30067.1 | dnaJ | CAGGBEG34_30029 | CAGGBEG34_250018 | Sensor protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.699 |
| CCD30067.1 | ksgA | CAGGBEG34_30029 | CAGGBEG34_260042 | Sensor protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme. | Hydroxyacylglutathione hydrolase (Glyoxalase II) (Glx II) GloB-like (part 2); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.704 |
| CCD30075.1 | CCD29721.1 | CAGGBEG34_30039 | CAGGBEG34_290014 | Putative DnaJ domain protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | Putative 16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.436 |
| CCD30075.1 | CCD30067.1 | CAGGBEG34_30039 | CAGGBEG34_30029 | Putative DnaJ domain protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pcp:putative cell process. | Sensor protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme. | 0.699 |
| dnaJ | CCD29721.1 | CAGGBEG34_250018 | CAGGBEG34_290014 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Putative 16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.463 |
| dnaJ | CCD30067.1 | CAGGBEG34_250018 | CAGGBEG34_30029 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Sensor protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme. | 0.699 |
| ksgA | CCD29721.1 | CAGGBEG34_260042 | CAGGBEG34_290014 | Hydroxyacylglutathione hydrolase (Glyoxalase II) (Glx II) GloB-like (part 2); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Putative 16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.413 |
| ksgA | CCD30067.1 | CAGGBEG34_260042 | CAGGBEG34_30029 | Hydroxyacylglutathione hydrolase (Glyoxalase II) (Glx II) GloB-like (part 2); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Sensor protein; Evidence 2b:Function of strongly homologous gene; Product type e:enzyme. | 0.704 |