STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilCType IV fimbrial assembly protein pilC; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type s:structure. (405 aa)    
Predicted Functional Partners:
pilB
Type IV pilus assembly protein PilB; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type s:structure.
   0.975
pilD-2
Fragment of Dephospho-CoA kinase (part 1); Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
    0.941
gspE
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   0.888
PilQ
Type IV pilus biosynthesis protein PilQ; Evidence 2b:Function of strongly homologous gene; Product type s:structure.
 
   0.886
pilQ
Type IV pilus biosynthesis protein PilQ; Evidence 2b:Function of strongly homologous gene; Product type s:structure.
 
   0.886
CCD28933.1
Putative Type II secretion system protein E; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt:putative transporter.
  
   0.885
CCD28938.1
Putative type II secretion system protein E; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf:putative factor.
  
    0.773
pilT
Type IV B pilus protein pilT; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type s:structure.
  
    0.773
TraJ
Plasmid transfer ATPase TraJ; Evidence 2b:Function of strongly homologous gene; Product type cp:cell process.
  
    0.771
pilD
Type 4 prepilin-like peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
    0.765
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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