STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCD29893.1Conserved hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function. (103 aa)    
Predicted Functional Partners:
CCD29894.1
Conserved hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function.
       0.773
CCD29895.1
Cytoplasmic hypothetical protein; Evidence 5:No homology to any previously reported sequences.
       0.762
CCD29896.1
Phage protein, HK97 gp10 family; Evidence 2b:Function of strongly homologous gene; Product type h:extrachromosomal origin.
       0.762
CCD29892.1
Hypothetical protein; Evidence 5:No homology to any previously reported sequences.
       0.578
CCD29889.1
Phage minor tail protein L; Evidence 2b:Function of strongly homologous gene; Product type h:extrachromosomal origin.
       0.517
CCD29890.1
Putative phage Minor tail protein M; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type h:extrachromosomal origin.
       0.517
CCD29891.1
Conserved hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function.
       0.517
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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