STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCD29974.1Putative hydrolase of the alpha/beta superfamily; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme. (214 aa)    
Predicted Functional Partners:
CCD29768.1
Conserved membrane hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function.
 
     0.534
CCD29972.1
Serine-type D-Ala-D-Ala carboxypeptidase; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme; Belongs to the peptidase S11 family.
 
     0.476
coq7
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (COQ7); Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
 
     0.467
CCD29973.1
Conserved hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function.
       0.457
CCD29015.1
Conserved hypothetical protein, DUF883; Evidence 4:Homologs of previously reported genes of unknown function.
  
     0.449
trpS
Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type e:enzyme; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.409
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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