STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traDType IV conjugative transfer system protein TraD; Evidence 2b:Function of strongly homologous gene; Product type cp:cell process. (623 aa)    
Predicted Functional Partners:
traH-2
Type IV conjugative transfer system protein TraH; Evidence 2b:Function of strongly homologous gene; Product type s:structure.
 
     0.798
traU-2
Type IV conjugative transfer protein TraU; Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type s:structure.
 
     0.795
G2JBM8_9BURK
Fragment of filamentation induced by cAMP protein Fic; Evidence 2b:Function of strongly homologous gene.
      0.794
traG-2
Type IV conjugative transfer system protein TraG; Evidence 2b:Function of strongly homologous gene; Product type s:structure.
 
     0.778
CCD30078.1
Putative phage-type endonuclease; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme.
  
     0.775
traF
IncF plasmid conjugative transfer pilus assembly protein TraF; Evidence 2b:Function of strongly homologous gene; Product type pt:putative transporter.
  
     0.775
CCD30157.1
Putative Phage P4 alpha, zinc-binding domain protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme.
  
     0.774
CCD30244.1
Putative conjugal transfer TrbA-like protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe:putative enzyme.
   
 
 0.733
traT
TraT-like type IV secretion system protein (IcmJ/DotN protein); Evidence 2b:Function of strongly homologous gene; Product type ps:putative structure.
   
 
 0.730
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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