STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCD30125.1Hypothetical protein; Evidence 6:Doubtful CDS. (76 aa)    
Predicted Functional Partners:
CCD30124.1
Conserved hypothetical protein, CopG domain protein DNA-binding domain protein; Evidence 4:Homologs of previously reported genes of unknown function.
 
   
 0.955
dinJ
DNA-damage-inducible protein (modular protein); Evidence 2a:Function of homologous gene experimentally demonstrated in an other organism; Product type f:factor.
 
 
 0.880
CCD28598.1
Conserved hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function.
   
 
 0.722
CCD30026.1
Conserved hypothetical protein; Evidence 4:Homologs of previously reported genes of unknown function.
   
 
 0.722
yefM
Antitoxin of the YoeB-YefM toxin-antitoxin system; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.633
CCD29671.1
Plasmid stability protein, antitoxin StbD; Evidence 2b:Function of strongly homologous gene; Product type h:extrachromosomal origin.
   
 
 0.633
repB
Replication initiation protein RepB protein; Evidence 3:Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type f:factor.
       0.432
Your Current Organism:
Glomeribacter gigasporarum
NCBI taxonomy Id: 1070319
Other names: C. Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum BEG34, Candidatus Glomeribacter gigasporarum str. BEG34, Candidatus Glomeribacter gigasporarum strain BEG34
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