STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG86796.1Hypothetical protein. (177 aa)    
Predicted Functional Partners:
SHG86818.1
LGFP repeat-containing protein.
       0.807
SHG86772.1
LGFP repeat-containing protein.
       0.586
SHG86838.1
ABC-2 type transport system permease protein.
       0.559
SHG86859.1
ABC-2 type transport system ATP-binding protein.
       0.559
SHG86877.1
rhamnopyranosyl-N-acetylglucosaminyl-diphospho- decaprenol beta-1,3/1,4-galactofuranosyltransferase.
       0.559
Your Current Organism:
Geodermatophilus nigrescens
NCBI taxonomy Id: 1070870
Other names: CCTCC AA 2011015, DSM 45408, G. nigrescens, Geodermatophilus nigrescens Nie et al. 2012 emend. Montero-Calasanz et al. 2017, Geodermatophilus sp. YIM 75980, JCM 18056, YIM 75980
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.