STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH18033.1Hypothetical protein. (468 aa)    
Predicted Functional Partners:
SHH17994.1
Hypothetical protein.
       0.470
Your Current Organism:
Geodermatophilus nigrescens
NCBI taxonomy Id: 1070870
Other names: CCTCC AA 2011015, DSM 45408, G. nigrescens, Geodermatophilus nigrescens Nie et al. 2012 emend. Montero-Calasanz et al. 2017, Geodermatophilus sp. YIM 75980, JCM 18056, YIM 75980
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