AFS00360.1 protein (Lactobacillus buchneri CD034)

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Score

AFS00360.1

Nucleic acid-binding protein. (184 aa)

Predicted Functional Partners:

rpsC

0.867

rpmI

0.846

infC

0.843

rplT

0.819

rpsD

0.797

rplK

0.794

rpsF

0.785

rpsP

0.785

rpsB

0.782

trmD

0.772

Your Current Organism:

Lactobacillus buchneri CD034

NCBI taxonomy Id: 1071400
Other names: L. buchneri CD034, Lactobacillus buchneri str. CD034, Lactobacillus buchneri strain CD034

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFS00360.1	infC	LBUCD034_1322	LBUCD034_1333	Nucleic acid-binding protein.	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	0.843
AFS00360.1	rplK	LBUCD034_1322	LBUCD034_1519	Nucleic acid-binding protein.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.794
AFS00360.1	rplT	LBUCD034_1322	LBUCD034_1331	Nucleic acid-binding protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.819
AFS00360.1	rpmI	LBUCD034_1322	LBUCD034_1332	Nucleic acid-binding protein.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.846
AFS00360.1	rpsB	LBUCD034_1322	LBUCD034_1106	Nucleic acid-binding protein.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.782
AFS00360.1	rpsC	LBUCD034_1322	LBUCD034_1793	Nucleic acid-binding protein.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.867
AFS00360.1	rpsD	LBUCD034_1322	LBUCD034_1027	Nucleic acid-binding protein.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.797
AFS00360.1	rpsF	LBUCD034_1322	LBUCD034_0009	Nucleic acid-binding protein.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.785
AFS00360.1	rpsP	LBUCD034_1322	LBUCD034_1251	Nucleic acid-binding protein.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.785
AFS00360.1	trmD	LBUCD034_1322	LBUCD034_1248	Nucleic acid-binding protein.	tRNA-(guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.772
infC	AFS00360.1	LBUCD034_1333	LBUCD034_1322	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Nucleic acid-binding protein.	0.843
infC	rplK	LBUCD034_1333	LBUCD034_1519	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.863
infC	rplT	LBUCD034_1333	LBUCD034_1331	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.996
infC	rpmI	LBUCD034_1333	LBUCD034_1332	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.967
infC	rpsB	LBUCD034_1333	LBUCD034_1106	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.955
infC	rpsC	LBUCD034_1333	LBUCD034_1793	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.906
infC	rpsD	LBUCD034_1333	LBUCD034_1027	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.890
infC	rpsF	LBUCD034_1333	LBUCD034_0009	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.900
infC	rpsP	LBUCD034_1333	LBUCD034_1251	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.888
infC	trmD	LBUCD034_1333	LBUCD034_1248	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	tRNA-(guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.437