STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoBPhosphate regulon transcriptional regulatory protein. (241 aa)    
Predicted Functional Partners:
phoR
Phosphate regulon sensor kinase.
 0.997
ompR
Putative response regulator.
  
  
 
0.923
AFS00504.1
Trypsin family serine protease.
  
  
 0.858
AFS00858.1
Signal transduction histidine kinase.
 
 0.846
AFR99788.1
Signal transduction histidine kinase.
 
 0.833
AFR99715.1
Sensor histidine kinase.
 
 0.831
arlS
Putative histidine kinase.
 
 0.783
AFR99952.1
Histidine protein kinase.
 
 0.721
hpk1
Histidine kinase.
 
 0.703
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
     
 0.553
Your Current Organism:
Lactobacillus buchneri CD034
NCBI taxonomy Id: 1071400
Other names: L. buchneri CD034, Lactobacillus buchneri str. CD034, Lactobacillus buchneri strain CD034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.