STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFS00875.1Endolysin. (307 aa)    
Predicted Functional Partners:
AFS00874.1
Hypothetical protein.
 
    0.834
AFR99444.1
Hypothetical protein.
  
     0.767
AFS00829.1
Transcriptional regulator, MerR family.
  
     0.751
AFR99443.1
Hypothetical protein.
  
     0.736
AFS01232.1
Putative cell wall-associated protease.
  
     0.734
AFR99544.1
Hypothetical protein.
  
     0.717
AFR99894.1
Hypothetical protein.
  
     0.703
AFR99690.1
Surface layer protein.
  
     0.698
AFS01156.1
Hypothetical protein; FOG: PKD repeat.
  
     0.697
AFS01226.1
Hypothetical protein.
  
     0.677
Your Current Organism:
Lactobacillus buchneri CD034
NCBI taxonomy Id: 1071400
Other names: L. buchneri CD034, Lactobacillus buchneri str. CD034, Lactobacillus buchneri strain CD034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.