STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFS01053.1Putative phosphohydrolase. (284 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.983
AFR99131.1
Predicted membrane protein.
 
     0.732
AFS01134.1
Predicted outer membrane protein.
  
     0.634
AFS01295.1
Putative HTH-type transcriptional regulator.
  
     0.625
recq1
ATP-dependent DNA helicase.
  
 0.535
recq3
ATP-dependent DNA helicase RecQ.
  
 0.535
dinG
DNA-directed DNA polymerase III epsilon subunit; 3'-5' exonuclease.
  
 0.524
AFS01294.1
Major facilitator superfamily permease.
  
     0.513
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
  
 0.512
AFS01145.1
Putative 2-deoxy-D-gluconate 3-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.469
Your Current Organism:
Lactobacillus buchneri CD034
NCBI taxonomy Id: 1071400
Other names: L. buchneri CD034, Lactobacillus buchneri str. CD034, Lactobacillus buchneri strain CD034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.