STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG57_23435TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (746 aa)    
Predicted Functional Partners:
BG57_24295
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.965
BG57_16320
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.958
BG57_23850
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.958
BG57_27800
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.941
BG57_15445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.930
BG57_15870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 
 0.930
BG57_12415
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.796
BG57_10985
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.644
BG57_15550
Fe(II)-dependent oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.566
BG57_16025
Cobalamin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.562
Your Current Organism:
Caballeronia grimmiae
NCBI taxonomy Id: 1071679
Other names: Burkholderia grimmiae, Burkholderia sp. R27, Burkholderia sp. enrichment culture clone R27, C. grimmiae, CGMCC 1.11013, Caballeronia grimmiae (Tian et al. 2013) Dobritsa and Samadpour 2016, DSM 25160, LMG 27580, LMG:27580, Paraburkholderia grimmiae, Paraburkholderia grimmiae (Tian et al. 2013) Sawana et al. 2015, strain R27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.