STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG40117.1RagB/SusD domain-containing protein. (469 aa)    
Predicted Functional Partners:
SHG40141.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.961
SHG40090.1
Predicted Zn-dependent peptidase; Belongs to the peptidase M16 family.
 
     0.854
SHG74228.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.843
SHG73950.1
Hypothetical protein.
  
     0.690
SHG40009.1
Hypothetical protein.
  
     0.681
SHF72697.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.677
SHG02176.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.665
SHF73825.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.637
SHG26426.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.636
SHG21107.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.620
Your Current Organism:
Salegentibacter echinorum
NCBI taxonomy Id: 1073325
Other names: CICC 10466, DSM 24579, NRRL B-59666, S. echinorum, Salegentibacter echinorum Xia et al. 2014, Salegentibacter sp. HD4, strain HD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.