STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO59640.1Antitoxin component YwqK of the YwqJK toxin-antitoxin module. (362 aa)    
Predicted Functional Partners:
SHO59637.1
Anti-anti-sigma factor.
 
     0.692
SHO59644.1
Hypothetical protein.
 
 
   0.652
SHO59642.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.651
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family.
       0.628
SHO59645.1
Hypothetical protein.
 
 
   0.613
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.603
SHO59650.1
Protein of unknown function.
 
     0.508
SHO59647.1
Ca-activated chloride channel family protein.
 
     0.493
SHO63732.1
Peptidyl-prolyl cis-trans isomerase SurA.
  
 
   0.477
SHO63697.1
Arginase family protein; Belongs to the arginase family.
  
     0.430
Your Current Organism:
Algoriphagus zhangzhouensis
NCBI taxonomy Id: 1073327
Other names: A. zhangzhouensis, Algoriphagus sp. 12C11, Algoriphagus zhangzhouensis Yang et al. 2013, CGMCC 1.11027, DSM 25035, MCCC 1F01099, strain 12C11
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