STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO63496.1PAS domain-containing protein. (131 aa)    
Predicted Functional Partners:
SHO63470.1
Response regulator receiver domain-containing protein.
  
 0.999
SHO59468.1
Hpt domain-containing protein.
  
 0.997
SHO64511.1
PAS domain S-box-containing protein.
  
 0.992
SHO59723.1
PAS domain S-box-containing protein.
  
 0.991
SHO59445.1
PAS domain-containing protein.
  
 0.983
SHO59606.1
PAS domain S-box-containing protein.
  
 0.983
SHO65273.1
PAS domain S-box-containing protein.
  
 0.983
SHO64255.1
Predicted ATPase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
  
 0.982
SHO64601.1
Signal transduction histidine kinase.
 
 0.965
SHO60279.1
Response regulator receiver domain-containing protein.
  
 0.961
Your Current Organism:
Algoriphagus zhangzhouensis
NCBI taxonomy Id: 1073327
Other names: A. zhangzhouensis, Algoriphagus sp. 12C11, Algoriphagus zhangzhouensis Yang et al. 2013, CGMCC 1.11027, DSM 25035, MCCC 1F01099, strain 12C11
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