STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO64400.1Diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein). (86 aa)    
Predicted Functional Partners:
SHO61893.1
PDZ domain-containing protein.
    
  0.799
SHO62233.1
ATPase family associated with various cellular activities (AAA).
     
 0.785
SHO59642.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.774
SHO62064.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.774
SHO62065.1
3-hydroxyacyl-CoA dehydrogenase.
 
 0.575
SHO64402.1
Citrate synthase; Belongs to the citrate synthase family.
   
   0.531
SHO59519.1
Acyl-CoA dehydrogenase.
   
 
 0.496
SHO60346.1
glutaryl-CoA dehydrogenase.
   
 
 0.496
SHO61949.1
Acyl-CoA dehydrogenase.
   
 
 0.496
SHO62063.1
Acyl-CoA dehydrogenase.
   
 
 0.496
Your Current Organism:
Algoriphagus zhangzhouensis
NCBI taxonomy Id: 1073327
Other names: A. zhangzhouensis, Algoriphagus sp. 12C11, Algoriphagus zhangzhouensis Yang et al. 2013, CGMCC 1.11027, DSM 25035, MCCC 1F01099, strain 12C11
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