STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO65111.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
SHO65110.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.646
SHO63006.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.569
SHO65109.1
Hypothetical protein.
       0.540
SHO65113.1
Hypothetical protein.
       0.539
SHO65114.1
HDIG domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.539
SHO65116.1
Tetratricopeptide repeat-containing protein.
       0.519
SHO62685.1
Hypothetical protein.
  
     0.463
SHO60914.1
Hypothetical protein.
  
     0.407
SHO64398.1
Hypothetical protein.
  
     0.405
SHO64935.1
Protein of unknown function.
  
     0.401
Your Current Organism:
Algoriphagus zhangzhouensis
NCBI taxonomy Id: 1073327
Other names: A. zhangzhouensis, Algoriphagus sp. 12C11, Algoriphagus zhangzhouensis Yang et al. 2013, CGMCC 1.11027, DSM 25035, MCCC 1F01099, strain 12C11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.