STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETD17112.1Hypothetical protein. (198 aa)    
Predicted Functional Partners:
ETD17113.1
Hypothetical protein.
 
  
 0.986
ETD16630.1
Stage IV sporulation protein A.
  
  
 0.774
ETD24609.1
Stage V sporulation protein AC.
  
    0.691
ETD24610.1
Stage V sporulation protein AD.
  
     0.649
ETD19808.1
Small, acid-soluble spore protein C1.
  
    0.604
ETD17129.1
RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.604
ETD24611.1
Stage V sporulation protein AE.
  
     0.598
ETD19714.1
Stage IV sporulation protein B.
  
    0.561
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.557
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
    0.503
Your Current Organism:
Ruminococcus lactaris
NCBI taxonomy Id: 1073376
Other names: R. lactaris CC59_002D, Ruminococcaceae bacterium CC59_002D, Ruminococcus lactaris CC59_002D, Ruminococcus sp. CC59_002D
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.