STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMH27586.1Hypothetical protein. (174 aa)    
Predicted Functional Partners:
mrnC
Ribonuclease-3 family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
 
  
 0.973
SMH27582.1
23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
  
 0.962
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.938
SMH27595.1
RNA polymerase sporulation-specific sigma factor; Belongs to the sigma-70 factor family.
  
    0.753
SMH26886.1
PDZ domain-containing protein.
  
     0.676
SMH27560.1
Serine O-acetyltransferase.
  
  
 0.649
SMH40869.1
RNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
  
 0.590
SMH40839.1
Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
  
     0.554
SMH27237.1
Polysaccharide transporter, PST family.
  
     0.553
SMH40130.1
Thiamine kinase.
  
     0.535
Your Current Organism:
Carnobacterium iners
NCBI taxonomy Id: 1073423
Other names: C. iners, CCUG 62000, Carnobacterium iners Snauwaert et al. 2013, Carnobacterium sp. LMG 26642, DSM 28070, LMG 26642, LMG:26642
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.