STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMH39992.1Oxygen-dependent protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (467 aa)    
Predicted Functional Partners:
SMH26900.1
Competence protein ComFC.
  
    0.615
SMH39972.1
Ribonuclease BN, tRNA processing enzyme.
       0.601
SMH33966.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
 0.597
SMH33811.1
UDP-galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
  0.571
SMH27170.1
Hypothetical protein.
  
     0.560
SMH37632.1
Hypothetical protein.
  
    0.549
SMH39996.1
Putative aminopeptidase FrvX.
       0.535
SMH37631.1
Hypothetical protein.
  
     0.531
SMH27187.1
Protein of unknown function.
  
  
  0.522
SMH39967.1
Lipoate-protein ligase.
       0.520
Your Current Organism:
Carnobacterium iners
NCBI taxonomy Id: 1073423
Other names: C. iners, CCUG 62000, Carnobacterium iners Snauwaert et al. 2013, Carnobacterium sp. LMG 26642, DSM 28070, LMG 26642, LMG:26642
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