STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000225825_02685Unannotated protein. (338 aa)    
Predicted Functional Partners:
GCA_000225825_02686
Unannotated protein.
 
 0.999
GCA_000225825_02687
Unannotated protein.
 
 0.999
GCA_000225825_00654
Unannotated protein.
 
  
 
0.782
GCA_000225825_00821
Unannotated protein.
   
 
 0.762
GCA_000225825_02852
Unannotated protein.
 
  
 
0.708
GCA_000225825_01040
Unannotated protein.
 
  
 
0.694
GCA_000225825_00619
Unannotated protein.
   
   0.672
GCA_000225825_00625
Unannotated protein.
  
  
 
0.668
GCA_000225825_01640
Unannotated protein.
    
   0.667
GCA_000225825_00624
Unannotated protein.
 
   
  0.622
Your Current Organism:
Brachybacterium squillarum
NCBI taxonomy Id: 1074488
Other names: B. squillarum M-6-3, Brachybacterium sp. M-6-3, Brachybacterium squillarum JCM 16464, Brachybacterium squillarum KACC 14221, Brachybacterium squillarum M-6-3, Brachybacterium squillarum str. M-6-3, Brachybacterium squillarum strain M-6-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.