STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ88835.1Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19. (332 aa)    
Predicted Functional Partners:
SDK43801.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.778
SDM33939.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.761
SDL01186.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.621
SDJ88787.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.588
SDJ88886.1
TonB-linked outer membrane protein, SusC/RagA family.
  
    0.550
SDM71157.1
TonB-dependent siderophore receptor.
  
   0.545
SDL49336.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.504
SDM70152.1
Iron complex outermembrane recepter protein.
  
   0.498
SDL27210.1
Iron complex outermembrane recepter protein.
  
   0.473
SDJ88924.1
Starch-binding associating with outer membrane.
       0.471
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.