STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ76093.1Protein of unknown function DUF58. (301 aa)    
Predicted Functional Partners:
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
       0.781
SDL04289.1
Protein of unknown function.
 
    0.781
SDM62861.1
N-terminal double-transmembrane domain-containing protein.
 
    0.777
SDJ76025.1
Hypothetical protein.
 
     0.776
SDK79789.1
Hypothetical protein.
 
     0.771
SDL45282.1
Hypothetical protein.
  
     0.769
SDK81679.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.768
SDK80046.1
Tetratricopeptide repeat-containing protein.
  
    0.759
SDL84919.1
MoxR-like ATPase.
 
  
 0.745
SDL05993.1
Ca-activated chloride channel family protein.
 
    0.731
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.