STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ94292.1Hypothetical protein. (212 aa)    
Predicted Functional Partners:
SDJ94255.1
4-hydroxy-tetrahydrodipicolinate reductase; Belongs to the DapB family.
       0.794
SDJ94104.1
Lipopolysaccharide-assembly.
 
    0.764
SDK32310.1
Hypothetical protein.
  
    0.760
SDK17342.1
OstA-like protein.
  
    0.752
SDJ75025.1
RNA polymerase Rpb6.
  
     0.741
SDK60696.1
Protein of unknown function.
  
     0.733
SDJ78675.1
Hypothetical protein.
  
     0.688
SDL35007.1
Protein of unknown function.
  
     0.686
SDJ94012.1
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
     0.682
SDK22856.1
Protein of unknown function.
  
     0.657
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.