STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK29315.1Protein of unknown function. (257 aa)    
Predicted Functional Partners:
SDJ80585.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
     0.931
SDK29239.1
Protein of unknown function.
 
     0.917
SDM10548.1
Azurin.
 
     0.913
SDL10795.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
     0.855
SDK29421.1
Hydroxypyruvate isomerase.
 
     0.763
SDK29279.1
Inosose dehydratase.
       0.752
SDK29205.1
Tat (twin-arginine translocation) pathway signal sequence.
 
     0.729
SDL49833.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
     0.703
SDL11644.1
Gluconate 2-dehydrogenase subunit 3.
  
     0.693
SDM11897.1
Protein of unknown function.
 
     0.684
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.