STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK38416.1Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (427 aa)    
Predicted Functional Partners:
SDL92369.1
Signal transduction histidine kinase.
  
 0.948
SDK38374.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
 
  0.870
SDM43529.1
Signal transduction histidine kinase.
   
 0.865
SDL62920.1
Signal transduction histidine kinase.
 
 
0.853
SDL06151.1
Signal transduction histidine kinase.
 
 
0.852
SDK28464.1
Signal transduction histidine kinase.
   
 0.844
SDJ83331.1
Signal transduction histidine kinase.
 
 
0.832
SDK38319.1
HlyD family secretion protein.
 
     0.828
SDK42030.1
PAS domain S-box-containing protein.
 
 
 0.819
SDL09479.1
Signal transduction histidine kinase.
 
 
 0.812
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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