STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK74996.1Dual specificity phosphatase, catalytic domain. (162 aa)    
Predicted Functional Partners:
SDK96627.1
Internalin A.
  
 0.917
SDJ91284.1
WD domain-containing protein, G-beta repeat-containing protein.
   
 0.887
SDM42410.1
Protein phosphatase.
  
 
 0.821
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
    
  0.804
SDK74948.1
Uncharacterized protein.
       0.689
SDK74911.1
TLP18.3, Psb32 and MOLO-1 founding protein of phosphatase.
       0.680
SDL63428.1
TIGR02452 family protein.
  
     0.663
SDL07653.1
PLD-like domain-containing protein.
  
 
  0.654
SDJ90085.1
Uncharacterized membrane protein.
    
 
 0.642
SDK85681.1
Hypothetical protein.
    
 0.633
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.