Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDK83290.1 | SDK83331.1 | SAMN05421823_103671 | SAMN05421823_103672 | Uncharacterized membrane protein. | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.799 |
| SDK83290.1 | SDK83375.1 | SAMN05421823_103671 | SAMN05421823_103673 | Uncharacterized membrane protein. | Hypothetical protein. | 0.602 |
| SDK83290.1 | SDK83426.1 | SAMN05421823_103671 | SAMN05421823_103674 | Uncharacterized membrane protein. | Putative signal transducing protein. | 0.592 |
| SDK83290.1 | SDK83458.1 | SAMN05421823_103671 | SAMN05421823_103675 | Uncharacterized membrane protein. | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.598 |
| SDK83331.1 | SDK83290.1 | SAMN05421823_103672 | SAMN05421823_103671 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Uncharacterized membrane protein. | 0.799 |
| SDK83331.1 | SDK83375.1 | SAMN05421823_103672 | SAMN05421823_103673 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Hypothetical protein. | 0.606 |
| SDK83331.1 | SDK83426.1 | SAMN05421823_103672 | SAMN05421823_103674 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Putative signal transducing protein. | 0.606 |
| SDK83331.1 | SDK83458.1 | SAMN05421823_103672 | SAMN05421823_103675 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.665 |
| SDK83331.1 | SDL77480.1 | SAMN05421823_103672 | SAMN05421823_10881 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family. | 0.482 |
| SDK83331.1 | panC | SAMN05421823_103672 | SAMN05421823_103561 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.647 |
| SDK83331.1 | pheT | SAMN05421823_103672 | SAMN05421823_102653 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.531 |
| SDK83331.1 | priA | SAMN05421823_103672 | SAMN05421823_10225 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.554 |
| SDK83331.1 | proS | SAMN05421823_103672 | SAMN05421823_108266 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). | 0.756 |
| SDK83331.1 | truA | SAMN05421823_103672 | SAMN05421823_1074 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.501 |
| SDK83375.1 | SDK83290.1 | SAMN05421823_103673 | SAMN05421823_103671 | Hypothetical protein. | Uncharacterized membrane protein. | 0.602 |
| SDK83375.1 | SDK83331.1 | SAMN05421823_103673 | SAMN05421823_103672 | Hypothetical protein. | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.606 |
| SDK83375.1 | SDK83426.1 | SAMN05421823_103673 | SAMN05421823_103674 | Hypothetical protein. | Putative signal transducing protein. | 0.794 |
| SDK83375.1 | SDK83458.1 | SAMN05421823_103673 | SAMN05421823_103675 | Hypothetical protein. | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.823 |
| SDK83426.1 | SDK83290.1 | SAMN05421823_103674 | SAMN05421823_103671 | Putative signal transducing protein. | Uncharacterized membrane protein. | 0.592 |
| SDK83426.1 | SDK83331.1 | SAMN05421823_103674 | SAMN05421823_103672 | Putative signal transducing protein. | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.606 |
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