STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK85058.1Phytoene dehydrogenase-related protein. (486 aa)    
Predicted Functional Partners:
SDL69214.1
Phytoene/squalene synthetase.
  
 
 0.829
SDM25909.1
Acyl transferase domain-containing protein.
    
 0.639
SDK85100.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
       0.554
SDK85014.1
Hypothetical protein.
       0.529
SDL02362.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
 
  
 0.480
SDM35620.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
 0.478
SDK65185.1
Putative membrane protein.
    
 0.454
SDM11508.1
Dehydrogenase (flavoprotein).
 
 
 0.448
SDM17387.1
Monoamine oxidase.
     
 0.429
SDL79078.1
Magnesium chelatase subunit I.
  
 
 0.421
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.