STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL06630.1PhnB protein. (143 aa)    
Predicted Functional Partners:
SDL06719.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
     0.956
SDL00438.1
HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes.
   
    0.697
SDL06590.1
Dihydrofolate reductase.
 
     0.694
SDL06540.1
Hypothetical protein.
       0.665
SDK30210.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.628
SDK30341.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.628
SDL91468.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.628
SDL92211.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.628
SDL92272.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.628
SDL06680.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.556
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.