STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL14323.1Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (359 aa)    
Predicted Functional Partners:
SDK63743.1
Hypothetical protein.
 
     0.922
SDK22553.1
Xylan 1,4-beta-xylosidase.
  
  
  0.586
SDJ82824.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.521
SDL62951.1
Glycosyl-hydrolase 97 C-terminal, oligomerisation.
  
     0.509
SDM35524.1
Lysophospholipase L1.
  
     0.491
SDM39356.1
Lysophospholipase L1.
  
     0.453
SDL29242.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
   
  0.440
SDK20831.1
Beta-xylosidase, GH43 family; Belongs to the glycosyl hydrolase 43 family.
     0.434
SDJ98298.1
Glycosyl hydrolases family 35; Belongs to the glycosyl hydrolase 35 family.
  
     0.420
SDK30976.1
Hypothetical protein.
  
     0.420
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.