STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL48913.1Glucose/arabinose dehydrogenase, beta-propeller fold. (675 aa)    
Predicted Functional Partners:
SDM10353.1
Protein of unknown function.
 
     0.918
SDL48986.1
Protein of unknown function.
     0.898
SDM10581.1
PA14 domain-containing protein.
  
     0.775
SDL10826.1
Protein of unknown function.
 
     0.774
SDM18563.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
  0.741
SDK29388.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
     0.738
SDL49443.1
Protein of unknown function.
 
     0.719
SDL33391.1
Cytochrome c.
  
  
  0.706
SDL94873.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.706
SDL53062.1
Cytochrome c.
  
  
  0.697
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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