STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL49512.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (257 aa)    
Predicted Functional Partners:
SDL34849.1
Predicted O-methyltransferase YrrM.
 
  
   0.817
SDM25909.1
Acyl transferase domain-containing protein.
  
 0.807
SDK28813.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.745
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 0.741
SDK25155.1
NADPH-dependent glutamate synthase beta chain.
  
 
 0.730
SDK80134.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.718
SDK32447.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.707
SDK01540.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.650
SDL09900.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.650
SDL54266.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.650
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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