STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL44984.1Peptidase family M23. (637 aa)    
Predicted Functional Partners:
SDL45028.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
       0.794
SDL44946.1
Peroxiredoxin Q/BCP.
  
    0.767
SDM54639.1
Peptidase family M23.
  
 
  0.739
SDK72033.1
Peptidase family M23.
  
     0.711
SDK39846.1
Hypothetical protein.
  
     0.614
SDL44908.1
Transketolase.
       0.597
SDJ83236.1
Peptidase family M23.
  
     0.580
SDK67948.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
  
     0.574
SDL79551.1
Hypothetical protein.
  
     0.565
SDK66522.1
Hypothetical protein.
  
     0.543
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.