STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL46291.1Thioredoxin reductase (NADPH). (312 aa)    
Predicted Functional Partners:
SDJ90663.1
Thioredoxin 1; Belongs to the thioredoxin family.
 
 0.957
SDL46214.1
Bacillithiol biosynthesis deacetylase BshB1.
 
     0.809
SDL46253.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
       0.794
SDK28813.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.760
SDM18563.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.722
SDL44501.1
Thiol-disulfide isomerase or thioredoxin.
   
  0.715
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.696
SDK18759.1
Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
      0.692
SDK25155.1
NADPH-dependent glutamate synthase beta chain.
    
 0.681
SDK38870.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
     
 0.663
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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