STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL69273.1RNA polymerase sigma-70 factor, ECF subfamily. (169 aa)    
Predicted Functional Partners:
SDL53644.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.723
SDK23804.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.721
SDM56700.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.646
SDM08705.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.637
SDJ80186.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.631
SDM61517.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.586
SDL69246.1
Phytoene desaturase.
       0.573
SDL93005.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.559
SDL03336.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.538
SDL01186.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.506
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.