STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL85837.1Alginate lyase. (382 aa)    
Predicted Functional Partners:
SDL12416.1
Glycosyl Hydrolase Family 88.
     0.924
SDL12442.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
     0.892
SDM11735.1
Rhamnogalacturonyl hydrolase YesR.
  
     0.695
SDJ98522.1
Trehalose utilisation.
 
     0.619
SDL54877.1
alpha-L-rhamnosidase.
  
     0.531
SDL85869.1
2-deoxy-D-gluconate 3-dehydrogenase.
       0.466
SDM09674.1
Glycosyl hydrolases family 2, sugar binding domain.
  
     0.436
SDM42624.1
CarboxypepD_reg-like domain-containing protein.
  
     0.429
SDJ90047.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
   0.420
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
       0.416
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.