STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM12679.1Starch-binding associating with outer membrane. (478 aa)    
Predicted Functional Partners:
SDM12652.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.933
SDL05254.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.840
SDM59066.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.817
SDL85618.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.816
SDL86199.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.777
SDK01848.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.767
SDM12719.1
Hypothetical protein.
       0.746
SDL10696.1
Iron complex outermembrane recepter protein.
  
 
   0.724
SDK97836.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.724
SDL13059.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.720
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.