STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM35097.1N-acetylmuramoyl-L-alanine amidase. (782 aa)    
Predicted Functional Partners:
SDM35023.1
Hypothetical protein.
       0.773
SDM35058.1
Protein of unknown function.
       0.773
SDM35132.1
Hypothetical protein.
       0.773
SDM34982.1
Protein of unknown function.
       0.578
SDK62358.1
Hypothetical protein.
  
     0.555
SDM20490.1
Cytochrome c.
  
     0.439
SDL37138.1
Protein of unknown function.
  
     0.434
SDK34191.1
Phage tail tape measure protein, TP901 family, core region.
  
     0.427
SDM35168.1
Amidohydrolase.
   
   0.402
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.