STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM40154.1Putative GTP cyclohydrolase 1 type 2, NIF3 family. (286 aa)    
Predicted Functional Partners:
SDM40102.1
Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family.
       0.773
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.682
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
  0.546
folE
GTP cyclohydrolase I.
    
 0.546
SDJ76590.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
  0.543
SDM12334.1
Tetratricopeptide repeat-containing protein.
   
    0.511
SDK43544.1
2-amino-4-hydroxy-6- hydroxymethyldihydropteridinediphosphokinase.
    
  0.507
SDJ99497.1
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
   
 
  0.504
SDM40193.1
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
       0.486
SDM40056.1
Putative ABC transport system ATP-binding protein.
       0.465
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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