STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM41127.1Two-component system, chemotaxis family, CheB/CheR fusion protein. (1385 aa)    
Predicted Functional Partners:
SDJ90047.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
0.999
SDL92369.1
Signal transduction histidine kinase.
 
0.999
SDK42268.1
Signal transducing histidine kinase, homodimeric domain.
 
 0.998
SDK42227.1
Hypothetical protein.
  
 0.997
SDL91395.1
PAS domain S-box-containing protein.
 
0.997
SDM22969.1
PAS domain S-box-containing protein.
 
0.997
SDK42030.1
PAS domain S-box-containing protein.
 
0.996
SDK42421.1
Purine-binding chemotaxis protein CheW.
 
 0.996
SDL03643.1
PAS domain S-box-containing protein.
  
0.996
SDL09479.1
Signal transduction histidine kinase.
0.996
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.