STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM56700.1RNA polymerase sigma-70 factor, ECF subfamily. (202 aa)    
Predicted Functional Partners:
SDM56738.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
       0.782
SDL82356.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.750
SDL93005.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.750
SDL63081.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.742
SDM39429.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.664
SDL01186.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.660
SDJ88787.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.648
SDL69273.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.646
rsmG
16S rRNA (guanine527-N7)-methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.632
SDM09609.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.609
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.