STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM70235.1ABC-2 type transport system permease protein. (451 aa)    
Predicted Functional Partners:
SDM70200.1
ABC-2 type transport system permease protein.
 
     0.951
SDM70152.1
Iron complex outermembrane recepter protein.
 
     0.948
SDM70277.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.945
SDM32229.1
Fluoroquinolone transport system permease protein.
  
 
  0.617
SDM33204.1
Lipocalin-like domain-containing protein.
  
     0.616
SDJ90047.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
  0.549
SDM70799.1
Carbohydrate family 9 binding domain-like.
  
     0.528
SDK28353.1
Starch-binding associating with outer membrane.
  
     0.514
SDL14360.1
Hypothetical protein.
  
     0.485
SDL92369.1
Signal transduction histidine kinase.
  
  0.468
Your Current Organism:
Catalinimonas alkaloidigena
NCBI taxonomy Id: 1075417
Other names: Bacteroidetes bacterium CNU-914, C. alkaloidigena, Catalinimonas alkaloidigena Choi et al. 2013, DSM 25186, KCCM 90101, strain CNU-914
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.