STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF23996.1Putative endopeptidase. (680 aa)    
Predicted Functional Partners:
SFF37655.1
Aminopeptidase P Metallo peptidase. MEROPS family M24B; Belongs to the peptidase M24B family.
   
 
 0.674
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.639
SFF25460.1
Aminopeptidase N.
 
   
 0.610
SFF56850.1
Peptidyl-dipeptidase A.
  
   
 0.516
SFF24014.1
GAF domain-containing protein.
       0.511
SFF50802.1
Dipeptidyl-peptidase 7. Serine peptidase. MEROPS family S46; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.498
ruvB
Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
   
    0.493
SFF54970.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
  
 0.419
SFF37071.1
Fungalysin/Thermolysin Propeptide Motif.
  
    0.415
SFF56805.1
Prolyl oligopeptidase Serine peptidase. MEROPS family S09A.
  
  
 0.405
Your Current Organism:
Fontimonas thermophila
NCBI taxonomy Id: 1076937
Other names: CCUG 59713, DSM 23609, F. thermophila, Fontimonas thermophila Losey et al. 2013, Solimonas sp. HA-01, strain HA-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.